Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
[INSTALLTEST] Discovery.sh --> VCF is missing
I tried to launch the install test script (discovery.sh). All seems to work : no error in the logs, no error in the stderr. But at the end, I have this message :
INFO 10:29:26,082 QCommandLine - Script completed successfully with 2 total jobs
grep: test1.discovery.vcf: No such file or directory
Files - and benchmark/test1.discovery.vcf differ
Error: test results do not match benchmark data
Let me know which information can I show you to resolve my problem.