We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Let the 2018 GATK workshop season begin!
As I type this, four of my colleagues are kicking off a workshop in Taipei, hosted by Taiwan's National Applied Research Laboratories (NARLabs). For the next four days, they will be leading a cohort of ~40 participants through everything from core concepts to practical details involved in understanding and applying the GATK Best Practices for variant discovery. They will alternate between lectures and hands-on exercises, covering all current GATK workflows (germline and somatic short variants, plus somatic CNVs) as well as the pipelining systems that we recommend. And for the first time they'll be doing all of it with GATK4. Whoo! We've been working on this new formula and the updated materials for several months so as far as I'm concerned it's the most exciting event that I'm unable to attend this year...
But this is only the first of many workshops! In a few weeks, another workshop crew will be traveling to Montreal to deliver the same training course at McGill University. In April, I'll be taking a crew to Beijing, hosted by Intel China, which I'm really looking forward to given how much is happening in the genomics space over there; among other cool prospects I'm thrilled that we're going to get to try out the brand new Cromwell backend developed by Alibaba Cloud for running GATK pipelines in China. We're also working on scheduling another workshop in early May in Qatar, and we already have a couple of others scheduled in July (Cambridge UK) and September (Seville, Spain). Possibly others TBD, stay tuned...