Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Batch options in GenomicsDBImport
We are planning to test around 5000 WGS samples for Joint Variant calling and would like to follow as mentioned here
One of the caveats mentioned as "For very large numbers of samples, there are some batching options."
Can you please let me know about how batching option works if I have to analyze 5000 samples? I can't find any reference manual too. Thanks.