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MINIMUM_GENOME_FRACTION - doesn't impact results on picard.jar CollectGcBiasMetrics

JonRJonR IndianaMember

I ran picard CollectGCBiasMetrics on 3 different bamfiles using 10 different settings creating a total of 30 plots. I found no difference between any of the results.

MINIMUM_GENOME_FRACTION was set

from 1.0E-1 to 1.0E-5 (default)

and

from .1 to .00001

Log files are attached. Any idea what's going on or how to get this variable to stick? Thank you in advance for the feedback

Answers

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