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How can I identify the library ID in the fastq file name?
Dear NGS experts,
I just started to analyse NGS data. I recently received some files that were generated at EMBL. I want to start analyzing them but have a hard time to figure out the read groups in order to start with GATK data preprocessing (from FASTQ to BAM).
I am using the following article to learm about the different read groups i need to build the BAM file: here
My FASTQ file name is structured exactly as the one in the red rectangle in the image below. Sadly there is no "lib" in the file name.
Can anyone identify the read groups, especially the library identifier for me?
The Image source is from here.
Thank you so much.