Testing Intel Arria® 10 GX FPGA implementation of HaplotypeCaller (PairHMM)
I am a researcher from Chinese of Academy of Sciences.
I am trying to test the FPGA implementation of the HaplotypeCaller (PairHMM) on GATK 3.8-0-ge9d806836, using a Intel Arria® 10 GX FPGA (Arria 10, 10AX115N2F40E2LG).
I found a very useful link in gatk forum (https://gatkforums.broadinstitute.org/gatk/discussion/10501/testing-fpga-implementation-of-haplotypecaller-pairhmm), which says "Currently supported cards are the Nallatech 385a and Inspur F10A cards". And I tired the Intel® FPGA PairHMM Accelerator for Genomics Kernel Library on the website of Intel (https://downloadcenter.intel.com/download/27342/Intel-FPGA-PairHMM-Accelerator-for-Genomics-Kernel-Library-GKL-).
However, from my tests it doesn't work for Intel Arria® 10 GX FPGA. Is there any plan to support Intel‘s own board of FPGA implementation?