Which version of Spark works well with the current GATK 4.0?
I am interested in using GATK4.0 with Spark on my PC. From previous posts I noticed that there is compatibility issue (errors) of GATK4 with the latest version of Spark (2.1 or 2.2 if I am correct). Which version of Spark should I use to run GATK4.0 ?
Furthermore, will the calling results be different between the GATK-spark and GATK-withoutspark versions?
Thank you so much !