Notice:
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

About the result of CNVDiscoveryPipeline

@bhandsaker
This is the CNV result of my test: gs_cnv.genotypes.vcf.gz

#

But I have some doubt:
1. How can I select the CNV which belong to my test sample (there are so many background population) ,becuse the vcf file do not mark the CNV belong to which sample
2. The vcf file do not mark the genotypes (Homozygous or heterozygous) of each CNV.How can I known that infor.
Thank you very much !

Tagged:

Answers

Sign In or Register to comment.