To celebrate the release of GATK 4.0, we are giving away free credits for running the GATK4 Best Practices pipelines in FireCloud, our secure online analysis portal. It’s first come first serve, so sign up now to claim your free credits worth $250. Sponsored by Google Cloud. Learn more at

About the result of CNVDiscoveryPipeline

This is the CNV result of my test: gs_cnv.genotypes.vcf.gz


But I have some doubt:
1. How can I select the CNV which belong to my test sample (there are so many background population) ,becuse the vcf file do not mark the CNV belong to which sample
2. The vcf file do not mark the genotypes (Homozygous or heterozygous) of each CNV.How can I known that infor.
Thank you very much !



Sign In or Register to comment.