If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
How to use the background population sample?
I have some doubt about Genome STRiP software.
As we all know:To run discovery or genotyping on a single sequenced genome or a small set of genomes, you need to call your data against a background population, such as a set of genomes from the 1000 Genomes Project. The background population does not need to be matched to the target individuals.
My doubt are as follows:
How could I use the background population? If I hava a single sequenced genome sample (named: Sample AA),and I have 20 background sample.I did not find the parameter for the background population. I only know the parameter (- I) for the input bam file for target sample AA. Thank you very much.