DiagnoseTargets in GATK 4

dbeckerdbecker MunichMember

Hi,

if I understand this correctly there will be neither DepthOfCoverage nor DiagnoseTargets in GATK4:
https://github.com/broadinstitute/gatk/pull/4094

How should I calculate the Coverage now? Will there be another tool?
We are doing Panels and Exomes so DiagnoseTargets was a fast and necessary tool for us.

Best regards,
Daniel

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