Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
DiagnoseTargets in GATK 4
if I understand this correctly there will be neither DepthOfCoverage nor DiagnoseTargets in GATK4:
How should I calculate the Coverage now? Will there be another tool?
We are doing Panels and Exomes so DiagnoseTargets was a fast and necessary tool for us.