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DiagnoseTargets in GATK 4

dbeckerdbecker MunichMember ✭✭


if I understand this correctly there will be neither DepthOfCoverage nor DiagnoseTargets in GATK4:

How should I calculate the Coverage now? Will there be another tool?
We are doing Panels and Exomes so DiagnoseTargets was a fast and necessary tool for us.

Best regards,

Best Answer


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