Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
Notice:
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

CreateSequenceGroupingTSV

manolismanolis Member ✭✭
edited January 2018 in Ask the GATK team

Hi!

I copy and paste the code about CreateSequenceGroupingTSV and in this way I created a python file...
When I'm going to run it I have the following error:

:~/GATK4/IlluminaExomePairEnd/0.pipe$ python 8.CreateSequenceGroupingTSV.py
File "8.CreateSequenceGroupingTSV.py", line 31
hg38_protection_tag = ":1+"
^
IndentationError: unindent does not match any outer indentation level

Any help to fix it!?

Many thanks,
M

Best Answers

  • manolismanolis ✭✭
    Accepted Answer

    the ^ symbol is under the last ", after +

  • manolismanolis ✭✭
    Accepted Answer

    Many thanks shlee !!!

Answers

  • manolismanolis Member ✭✭
    Accepted Answer

    the ^ symbol is under the last ", after +

  • manolismanolis Member ✭✭
    Accepted Answer

    Many thanks shlee !!!

Sign In or Register to comment.