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merge the output from SVgenotyper of genomestrip

Hello,

I am running genometrip on genome sequencing data. i have 8 different varieties and i want to run genome strip for each species individually. after running the SVgenotype i got vcf file. Now, can i merge vcf from eight varieties and then run cnvdiscovery ?? Is this good way to identify deletion ??
Thanks in advance

Answers

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