Is there a consensus minimum number of probes to use as cutoff for GATK CNV pipeline (exome)

JakeCJakeC Member, Broadie

Hello,

I was just wondering if there was a cutoff used for the minimum number of probes that constitutes a segment. For example, there are a few segment calls made up of 2-3 probes that occur at a relatively increased frequency. If it is uncertain whether these calls are artifacts or not, are there additional steps to determine this?

Best,
Jake

Best Answer

Answers

Sign In or Register to comment.