We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Is there a consensus minimum number of probes to use as cutoff for GATK CNV pipeline (exome)
I was just wondering if there was a cutoff used for the minimum number of probes that constitutes a segment. For example, there are a few segment calls made up of 2-3 probes that occur at a relatively increased frequency. If it is uncertain whether these calls are artifacts or not, are there additional steps to determine this?