Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Mutect 2 B38 germline resource
Congratulations on GATK 4.0!
I'm looking at the instructions for Mutect2 where it suggests using a germline resource "--germline-resource af-only-gnomad.vcf.gz".
Do you have a version of this for b38 coming? Or know where I could obtain one?