Mutect2 version 4.beta.6
./gatk-launch Mutect2 --help
BETA FEATURE - FOR EVALUATION ONLY
Mutect2 version 188.8.131.52
./gatk Mutect2 --help
BETA FEATURE - WORK IN PROGRESS
Is there a timeline for having a stable release of Mutect2 ?
I have to check with the team and get back to you.
@Sheila , are there any news regarding release of stable MuTect2?
I just pinged the developers again. I will post here once I hear back. Sorry for the delay.
It seems there was some confusion, but Mutect2 has been out of beta since the GATK4 release We will update the docs asap.