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Has VariantAnnotator tool been removed from GATK
Hello, I am trying to run the following command with GATK 3-.8 without success. Has this tool been disabled?
srun java -Xmx"$MEM"g -jar $GATK \
-R "$REFERENCE" \
-T VariantAnnotator \
--variant "$OUTPUT"All_samples_recalibrated_and_normalized_variants.vcf \