Outlook on Grch38/hg38 for in exome and other targeted sequencing
Dear GATK team,
First of all, congratulations on releasing GATK4!
I was wondering, on this page: https://software.broadinstitute.org/gatk/download/bundle it is mentioned that the human genome reference builds you support actively are the following:
For Best Practices short variant discovery in exome and other targeted sequencing: b37/hg19
Last year we build an RNAseq pipeline and a preliminary DNAseq pipeline around GRCh38. Can you perhaps indicate how far out the publication of Best Practices for short variant discovery in exome and other targeted sequencing using GRCh38 is?
By the way, the link below the bullet points (https://software.broadinstitute.org/gatk/user%20guide/article.php?id=1213) gives a 404.
Keep up the good work,