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Filtering by sample specific DP thresholds in a multi-sample vcf
I need to filter (set to missing) genotypes that fail their own sample specific DP threshold (from the genotype fields), in a multi-sample vcf.
Is there anyway to do this? e.g. sample1 DP<25 flagged, sample2 DP<41 flagged.
The JEXL guide says it doesnt work on genotype fields. The VariantFiltration seems to only allow a single value to be supplied.