Somatic short variant discovery (SNVs + Indels)
Geraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin
edited March 2018 in Best Practices Workflows
Identify somatic short variants (SNVs + Indels) in a tumor-normal for an individual sample. Requires an appropriate Panel of Normals (PON).
|Somatic short variants tumor-normal pair||T-N BAMs to VCF||universal||yes||b37|
|Somatic short variants PON creation||Normal BAMs to PON||universal||yes||pending|
Documentation for these workflows is in development.
Post edited by Geraldine_VdAuwera on