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Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

how to order scaffolds and organize into putative chromosomes with BWA-MEM

Hello everyone,
I want to do Fst analysis about two populations, but I just have vcf file, so i want to know how to order scaffolds into chromosomes with BWA-MEM tools that I can do the Fst analysis.
Any help would be appreciated


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