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Running preprocessing steps on WGS and WES

eilalaneilalan BostonMember

Hello,

I would like to run GATK on my sequence. The input to the process is FASTQ files and the output should be a clean BAM ready for variant calling. Could you please let me know what pipelines are available and what are the differences between them? The image for the process is attached.

Many thanks,
Eila

Answers

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