Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Exception in thread "main" java.lang.NoClassDefFoundError: org/xerial/snappy/LoadSnappy

This can happen when you run GATK directly from the jar instead of using the gatk-launch script. The gatk-launch script sets an important system property: -Dsnappy.disable=true. You can either set this property manually, or use the launch script.

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