If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

How should I prepare for a GATK workshop?

edited February 2018 in Frequently Asked Questions

So you're going to a GATK workshop? Fantastic! We're looking forward to guiding you through some exercises that will help you master the tools. However -- in order to make the best of the time we have together, we'd like to ask you to come prepared. Specifically, unless the workshop hosts are providing computers, you MUST follow these instructions. That will provide you step by step instructions for getting your computer set up with the necessary software, data and all workshop materials you will need (including presentation slides).

The bundle will include links to PDFs that contain all the instructions we will give you during the session to help you follow along. We strongly recommend bringing a notebook and pen for writing notes as you work through the exercises. We usually do not distribute paper copies of the instructions in order to avoid wasting paper.

With that, you should be all set. See you soon!

Post edited by Geraldine_VdAuwera on
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