To celebrate the release of GATK 4.0, we are giving away free credits for running the GATK4 Best Practices pipelines in FireCloud, our secure online analysis portal. It’s first come first serve, so sign up now to claim your free credits worth $250. Sponsored by Google Cloud. Learn more at

Are there sample WDL workflows for GATK4?

I looked in and there was only one script, PreProcessingForVariantDiscovery_GATK4.wdl
It would be useful to have other sample workflows for germline/somatic calling, CNV, etc. as well as guidelines on how to use it with Spark.





Sign In or Register to comment.