The front line support team will be unavailable to answer questions until May 27th 2019 as we are celebrating Memorial Day. We will be back soon after. Thank you for your patience and we apologize for any inconvenience!
Are there sample WDL workflows for GATK4?
I looked in github.com/broadinstitute/wdl and there was only one script, PreProcessingForVariantDiscovery_GATK4.wdl
It would be useful to have other sample workflows for germline/somatic calling, CNV, etc. as well as guidelines on how to use it with Spark.