We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

to get the same results, must add -pairHMM LOGLESS_CACHING when I use the GATK 4.beta.4

Dear Dr. Geraldine
I have read https://gatkforums.broadinstitute.org/gatk/discussion/comment/40473#Comment_40473 about the reproduce questions. And I want to ask weather I must add -pairHMM LOGLESS_CACHING if i want to get the same result by the GATK version 4.beta.4.

Best Answer

  • SheilaSheila Broad Institute ✭✭✭✭✭
    edited November 2017 Accepted Answer


    Yes, I think you do need to use -pairHMM LOGLESS_CACHING in GATK4. However, I will confirm with the team and let you know for sure asap.


    EDIT: I have confirmation that you do need to use it :smile:

    Post edited by Sheila on


Sign In or Register to comment.