We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

Bug in HaplotypeCaller:GT is called “./.”,but AD and DP isn't 0

HI, I'd like to report a weird result from HaplotypeCaller.
We have a patient sequenced by targeted sequencing,We expected to see no heterozygous variants called in this locus,it have found the insert ,but GT is "./.", and miss the other information;
Therefore I'm really confused why the substitution has "./." called by the HaplotypeCaller and why it passed the filter.

Many Thanks



Sign In or Register to comment.