Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Congratulations on the paper in bioarchiv and following up on "curious zero quality reference calls"
Just scanned the ms and could not conclude if the old "bug" of contention is squashed in the latest version.
Can you tell if the base quality surrounding small indels is now close to specifications?
If so is there documentation of the coding the specifically addressed the change?
Congratulations in getting V4 ready to roll out.