Attention:
The frontline support team will be unavailable to answer questions on April 15th and 17th 2019. We will be back soon after. Thank you for your patience and we apologize for any inconvenience!

Involving the svtoolkit/cookbook/.../set_sv_params.sh

I am running through the cookbook example given found at: http://software.broadinstitute.org/software/genomestrip/cookbook-genotyping-novel-site-1000-genomes-phase-1

The set_sv_params.sh file needs to be altered to properly format where metadata is stored. I have input

SV_METADATA_DIR= ~/GenomeSTRiP/svtoolkit/

as is, I get the following error message:

You must specify SV metadata location in scripts/set_sv_params.sh as SV_METADATA_DIR=...

Any insight that can help me overcome this error message?

Thanks

Answers

Sign In or Register to comment.