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Involving the svtoolkit/cookbook/.../set_sv_params.sh
I am running through the cookbook example given found at: http://software.broadinstitute.org/software/genomestrip/cookbook-genotyping-novel-site-1000-genomes-phase-1
The set_sv_params.sh file needs to be altered to properly format where metadata is stored. I have input
as is, I get the following error message:
You must specify SV metadata location in scripts/set_sv_params.sh as SV_METADATA_DIR=...
Any insight that can help me overcome this error message?