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Test-drive the GATK tools and Best Practices pipelines on Terra
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New to GenomeSTRiP - Running Installtest Properly
So i am new to GenomeSTRiP. I have downloaded and extracted all the necessary pieces to run it and tried running the installtest.
I ran the install test twice using two different commands, the first being a regular call /path/to/discovery.sh. This accomplished seemingly nothing. To be sure, I then ran the second while explicitly calling it to an output.txt file. The out.txt file came back blank and I am not sure what I did wrong.
After some research into the forums, I believe I am probably not calling it correctly but do not know how to correct my errors.
Thanks for any and all help.
Remember, I am pretty new to GenomeSTRiP and terminal commands as well so please be detailed if you can!