If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

New to GenomeSTRiP - Running Installtest Properly

So i am new to GenomeSTRiP. I have downloaded and extracted all the necessary pieces to run it and tried running the installtest.

I ran the install test twice using two different commands, the first being a regular call /path/to/ This accomplished seemingly nothing. To be sure, I then ran the second while explicitly calling it to an output.txt file. The out.txt file came back blank and I am not sure what I did wrong.

After some research into the forums, I believe I am probably not calling it correctly but do not know how to correct my errors.

Thanks for any and all help.

Remember, I am pretty new to GenomeSTRiP and terminal commands as well so please be detailed if you can!


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