I was wondering if you guys are planning to release a new resource bundle with full hg38 support (+patches)?
Perhaps to celebrate the release of GATK4?
Yes, I think we will fully support hg38 and patches in GATK4 Have a look at this document as well.
Allright! Thanks for the info!
Why new bundle is composed with ALT contig fasta file, not using GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz? ALT contig are not interrupt mapping?
I think this tutorial and this dictionary entry will help.