Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

May I use CleanSam by default?

I'm thinking about implementing CleanSam into the NGS analysis pipeline after alignment. Will it be OK to run CleanSam and only after that run ValidateSamFile to be sure that files are ready for variant calling?


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