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Can GATK4.beta3 detect CNVs in whole exome sequencing?

NandaNanda CanadaMember
edited September 2017 in Ask the GATK team

Can GATK4.beta3 detect CNVs in whole exome sequencing?

Answers

  • SheilaSheila Broad InstituteMember, Broadie ✭✭✭✭✭

    @Nanda
    Hi,

    So far, we have a Best Practice workflow for detecting somatic CNVs in exome data. You can learn more about it here.

    As for somatic whole genome CNV and germline CNV detection, we should have some news coming out about those soon :smile:

    -Sheila

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