If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Mixed PoN (Blood + FFPE) ?
I have some FFPE WGS data. I am able to access TCGA bam file. I want to build a PoN for mutation and CNA analysis with 900+ blood tissues (TCGA) and 30+ FFPE tissues (TCGA + my own). Does this PoN make sense? Many thanks!
Or, simply, which is better?
1. Only 900+ blood tissues
2. Only 30+ FFPE tissues
3. Mixed PoN