Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

How to set ploidy option for haploid joint variant calling?


I have 1500 bacterial clean and sorted alignment bam file and I want to call variant and produce a multisample vcf file including 1500 sample. Bacteria are haploid. Do I need to set ploidy option to 1 or to the number of samples 1500?


Sign In or Register to comment.