Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
memory requirements for MUTECT2/GATK
please could you advise if there is any way to reduce the memory requirements for GATK/MUTECT2 (in GATK versions 3.5-3.8) ? Recently, we've started running MUTECT2 per chromosome on a SGE minicluster at UCSF, and it does not run unless we set 30GB per chromosome run.