Test-drive the GATK tools and Best Practices pipelines on Terra
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huge time difference between HC and UG against 2000 known variants
We are doing the benchmark analysis against amplicon sequencing data for 2000 known variants.
Both HC and UG have been tried.
However, it seems that HC take much longer time than UG, which is not acceptable, although HC should be better in calling variants.
I am wondering is there any solution to accelerate the calling process?
One sample analysis: