We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

gatk4 Allelic CNV

anand_mtanand_mt Member
edited August 2017 in Ask the GATK team


I have been using gatk4 alpha for copy number analysis. I have created PoN and did segmentation. Now I want to check for allelic CN which requires heterozygous sites. For now I am using germline heterozygous variants. is it okay ? Are there any suggestion on selecting variants ?

Sign In or Register to comment.