Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
it's a bug for the calculation of Mutect2 allele frequency ?
when I used Mutect2 to call mutations .
I got this bug ,
chr3 12649448 . C CCAAA GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:139,66:0.143:0:1:.:138,31:0:5 .
66/(139+66) = 0.32, not 0.143.
so what's wrong with Mutect2 ??