FastaAlternateReferenceMaker for polyploid

Are there any tools similar to FastaAlternateReferenceMaker that can create fasta sequences from a pooled-sequencing vcf file? The sample data came from 25 pooled diploid individuals, so I created the vcf for ploidy = 50. I know that a similar question was asked concerning multiple-sample vcfs (https://gatkforums.broadinstitute.org/gatk/discussion/1654/fastaalternatereferencemaker-for-several-individuals), but this case is different since the samples were all pooled without barcodes.
Any suggestions would be appreciated. Thanks!

Answers

Sign In or Register to comment.