Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Calling copy number from WGS data using PON from different platform
Hi, I'm trying to call somatic copy number form WGS data using the workflow laid out in cnv_somatic_copy_ratio_bam_workflow.wdl
However, I do not have a panel of normals for the sample. The data was sequenced using HiSeq 4000 with 100bp reads. Would it be reasonable to construct a panel of normals from publicly available data (1000 genomes project) that was sequenced using HiSeq 2000 and has 90bp reads?