Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
how to set the value "--contamination_fraction_to_filter" of Mutect2 ?
what's the meanning of the Mutect option "--contamination_fraction_to_filter " ?
how to set that value ?
it's value of ContEst result ？ I know ContEst is used to evaluate the cross-individual contamination ,and the result is bigger than 5% threhold,showing there is a servious contamination .