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My VQSR tranches-plot shows cumulative variants in tranch 0-90, 90-99, 99-99.9

Martin_ZieglerMartin_Ziegler Munich, GermanyMember
edited August 2017 in Ask the GATK team

Dear GATK-Team,

My VQSR tranches-plot (exome data) shows cumulative variants in tranch 0-90, 90-99, 99-99.9. To my understanding it should be the other way round (like in your article link).

My tranch file is:

# Variant quality score tranches file
# Version number 5




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