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Truth or control samples - Variant calling
Are we able to incorporate truth/control samples in addition to dbSNP when calling variants with GVCF (cohorts) or the traditional way with HaplotypeCaller. There are for example situations where the sequences are for Australian, E Asian, or African samples, and we would like to include truth/control samples for those areas, perhaps from 1000 genomes or some other source.
If possible, what arguments do we use.