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Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

MuTect v1

MuTect v1 -- Reliable and accurate identification of somatic point mutations in high-throughput sequencing data of cancer genomes. Note that a new version called MuTect2 has been integrated into the GATK as of version 3.5 as a beta preview. Once MuTect2 moves out of beta status, support for the original MuTect will be discontinued. You can find the MuTect2 tool doc at https://www.broadinstitute.org/gatk/guide/tooldocs/org_broadinstitute_gatk_tools_walkers_cancer_m2_MuTect2.php

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