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For WDL questions, see the WDL specification and WDL docs.
For Cromwell questions, see the Cromwell docs and please post any issues on Github.

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Archives for October 2018

New CloudSQL database fails initial migration

Accepted Answer 93 views 1 comment 0 points Most recent by danb October 2018Ask the Cromwell + WDL Team
Docker support for LSF backend

Answered 106 views 1 comment 0 points Most recent by Ruchi December 2018Ask the Cromwell + WDL Team
Recursive folders creation when running "Data Pre-Processing" workflow

Answered 141 views 1 comment 0 points Most recent by hkeward November 2018Ask the Cromwell + WDL Team
unable to do docker lookup

Accepted Answer 95 views 0 comments 0 points Started by afrieden October 2018 Ask the Cromwell + WDL Team
Import workflow - failed after changing from cromwell v32 to v36

Answered 196 views 1 comment 0 points Most recent by dplichta October 2018Ask the Cromwell + WDL Team
How to realize and control scatter-gather function with Cromwell in a VM machine

Answered 87 views 1 comment 0 points Most recent by Angry_Panda October 2018Ask the Cromwell + WDL Team
How are files and auto-scaling supposed to work on AWS?

Accepted Answer 82 views 0 comments 0 points Started by seandavi October 2018 Ask the Cromwell + WDL Team
submit via SSH

Answered 50 views 1 comment 0 points Most recent by staaan October 2018Ask the Cromwell + WDL Team
How can I use scatter/gather on a set of mixed paired-end and single-end libraries?

Accepted Answer 45 views 0 comments 0 points Started by seandavi October 2018 Ask the Cromwell + WDL Team
Cromwell + Google Cloud MySQL

Accepted Answer 111 views 1 comment 0 points Most recent by mooses October 2018Ask the Cromwell + WDL Team
https://ketodiettrial.com/dermavix-spain/

Accepted Answer 37 views 0 comments 0 points Started by swhanealsh October 2018 Ask the Cromwell + WDL Team
How to choose backend in WDL file

Accepted Answer 147 views 1 comment 0 points Most recent by staaan October 2018Ask the Cromwell + WDL Team
read_csv() could not read file

Accepted Answer 63 views 0 comments 0 points Started by shenwl October 2018 Ask the Cromwell + WDL Team
Run/Stop tasks in a WDL script

Question 35 views 1 comment 0 points Most recent by seandavi October 2018Ask the Cromwell + WDL Team
Editing a configuration file doesn't work

Answered 159 views 3 comments 0 points Most recent by OggieM October 2018Ask the Cromwell + WDL Team
Can't use named inputs

Accepted Answer 46 views 0 comments 0 points Started by CarlosBorroto October 2018 Ask the Cromwell + WDL Team
Running Cromwell on AWS Batch, using both S3 and GC filesystems

Accepted Answer 272 views 0 comments 0 points Started by Migwell October 2018 Ask the Cromwell + WDL Team
Does cromwell prioritise finishing workflows

Accepted Answer 46 views 5 comments 0 points Most recent by dario_romagnoli January 2019Ask the Cromwell + WDL Team
SamToFastqAndBwaMem error when running processing-for-variant-discovery-gatk4.wdl locally

Answered 466 views 18 comments 0 points Most recent by jaideepjoshi February 2019Ask the Cromwell + WDL Team
Where to find cromwell-genomics-ami.cloud-init.yaml or an example of it?

Accepted Answer 83 views 2 comments 0 points Most recent by Ruchi November 2018Ask the Cromwell + WDL Team
Relative path in json files for cromwell

Accepted Answer 220 views 0 comments 1 point Started by DivyKangeyan October 2018 Ask the Cromwell + WDL Team
cromwell on AWS: using instance storage

Accepted Answer 53 views 0 comments 0 points Started by ilya October 2018 Ask the Cromwell + WDL Team
cromwell is skipping a scatter call

Answered 53 views 3 comments 0 points Most recent by alphahmed October 2018Ask the Cromwell + WDL Team
Can I put variable in configuration file (for backend)

Accepted Answer 116 views 3 comments 0 points Most recent by staaan October 2018Ask the Cromwell + WDL Team

Ask the Cromwell + WDL Team

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