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Discussion List

• New CloudSQL database fails initial migration

  Accepted Answer 4 views 1 comment 0 points Most recent by danb October 31Ask the Cromwell + WDL Team
• Docker support for LSF backend

  Answered 20 views 1 comment 0 points Most recent by Ruchi December 3Ask the Cromwell + WDL Team
• Recursive folders creation when running "Data Pre-Processing" workflow

  Answered 40 views 1 comment 0 points Most recent by hkeward November 10Ask the Cromwell + WDL Team
• unable to do docker lookup

  Question 27 views 0 comments 0 points Started by afrieden October 30 Ask the Cromwell + WDL Team
• Import workflow - failed after changing from cromwell v32 to v36

  Answered 15 views 1 comment 0 points Most recent by dplichta October 29Ask the Cromwell + WDL Team
• How to realize and control scatter-gather function with Cromwell in a VM machine

  Answered 17 views 1 comment 0 points Most recent by Angry_Panda October 30Ask the Cromwell + WDL Team
• How are files and auto-scaling supposed to work on AWS?

  Question 12 views 0 comments 0 points Started by seandavi October 25 Ask the Cromwell + WDL Team
• submit via SSH

  Answered 17 views 1 comment 0 points Most recent by staaan October 26Ask the Cromwell + WDL Team
• How can I use scatter/gather on a set of mixed paired-end and single-end libraries?

  Question 19 views 0 comments 0 points Started by seandavi October 23 Ask the Cromwell + WDL Team
• Cromwell + Google Cloud MySQL

  Accepted Answer 22 views 1 comment 0 points Most recent by mooses October 26Ask the Cromwell + WDL Team
• https://ketodiettrial.com/dermavix-spain/

  Question 17 views 0 comments 0 points Started by swhanealsh October 22 Ask the Cromwell + WDL Team
• How to choose backend in WDL file

  Accepted Answer 21 views 1 comment 0 points Most recent by staaan October 22Ask the Cromwell + WDL Team
• read_csv() could not read file

  Question 11 views 0 comments 0 points Started by shenwl October 19 Ask the Cromwell + WDL Team
• Run/Stop tasks in a WDL script

  Question 18 views 1 comment 0 points Most recent by seandavi October 26Ask the Cromwell + WDL Team
• Editing a configuration file doesn't work

  Answered 44 views 3 comments 0 points Most recent by OggieM October 16Ask the Cromwell + WDL Team
• Can't use named inputs

  Question 20 views 0 comments 0 points Started by CarlosBorroto October 15 Ask the Cromwell + WDL Team
• Running Cromwell on AWS Batch, using both S3 and GC filesystems

  Question 48 views 0 comments 0 points Started by Migwell October 15 Ask the Cromwell + WDL Team
• Does cromwell prioritise finishing workflows

  Accepted Answer 22 views 3 comments 0 points Most recent by dario_romagnoli December 6Ask the Cromwell + WDL Team
• SamToFastqAndBwaMem error when running processing-for-variant-discovery-gatk4.wdl locally

  Answered 63 views 3 comments 0 points Most recent by bshifaw October 11Ask the Cromwell + WDL Team
• Where to find cromwell-genomics-ami.cloud-init.yaml or an example of it?

  Accepted Answer 21 views 2 comments 0 points Most recent by Ruchi November 6Ask the Cromwell + WDL Team
• Relative path in json files for cromwell

  Question 22 views 0 comments 1 point Started by DivyKangeyan October 9 Ask the Cromwell + WDL Team
• cromwell on AWS: using instance storage

  Question 21 views 0 comments 0 points Started by ilya October 3 Ask the Cromwell + WDL Team
• cromwell is skipping a scatter call

  Answered 27 views 3 comments 0 points Most recent by alphahmed October 10Ask the Cromwell + WDL Team
• Can I put variable in configuration file (for backend)

  Accepted Answer 29 views 3 comments 0 points Most recent by staaan October 2Ask the Cromwell + WDL Team