GATK Support Forum
Category List
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Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
241 discussions
976 comments
Most recent: The GATK Best Practices for variant calling on RNAseq, in full detail by aalvarezeguiluz on
9:18AM
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Expand for more options.Errors, bugs, problems and usage questions for the developers of the GATK or the community at large
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Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
124 discussions
558 comments
Most recent: (How to) Filter variants either with VQSR or by hard-filtering by MehulS on
January 19
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
196 discussions
4.3K comments
Most recent: When should I use -L to pass in a list of intervals? by MehulS on
January 20
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
660 discussions
-42 comments
Most recent: Identifying de novo variants in a mutant without good reference genome by Teatime on
December 2018
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Expand for more options.Tools developed by other groups
771 discussions
2.1K comments
Most recent: GATK 4 version still have some problems with asterisk in the VCF files. by shlee on
January 17