Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
GATK Support Forum
Category List
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Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
265 discussions
1K comments
Most recent: New! Mutect2 for Liquid Biopsy by Alexandra_Zhayvoron on
July 19
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Expand for more options.Errors, bugs, problems and usage questions for the developers of the GATK or the community at large
16.9K discussions
43.2K comments
Most recent: HaplotypeCaller single sample mode error by SkyWarrior on
5:14PM
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Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
141 discussions
706 comments
Most recent: (How to) Call common and rare germline copy number variants by Begali on
July 20
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
196 discussions
4.3K comments
Most recent: What should I use as known variants/sites for running tool X? by TamaraD on
July 8
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
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Expand for more options.Tools developed by other groups
786 discussions
2.2K comments
Most recent: Mutect Analysis without a paired tumour normal & Analysis Criteria by LaboBernard on
July 3