GATK Support Forum
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Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
237 discussions
886 comments
Most recent: What is this Machine Learning thing anyway? by Geraldine_VdAuwera on
6:54AM
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Expand for more options.Errors, bugs, problems and usage questions for the developers of the GATK or the community at large
7.7K discussions
36.4K comments
Most recent: Somatic variant calling using Mutect2 --- normal reference is the genomes of two people by bigbadbo on
2:37PM
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Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
120 discussions
238 comments
Most recent: Base Quality Score Recalibration (BQSR) by ekanterakis on
10:53AM
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
195 discussions
3.9K comments
Most recent: (How to) Mark duplicates with MarkDuplicates or MarkDuplicatesWithMateCigar by yfarjoun on
1:43PM
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
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Expand for more options.Tools developed by other groups
506 discussions
2K comments
Most recent: SVPreprocess.qError: Cannot determine library identifier for read HS2000-1273_166:4:1116:21037:84252 by bhandsaker on
May 4