Notice:
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
GATK Support Forum
Category List
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Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
267 discussions
1K comments
Most recent: Funcotator: Functional annotation out of beta by joseph7e on
September 6
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Expand for more options.Errors, bugs, problems and usage questions. This forum is maintained by support staff who answer questions with assistance from the developers of the GATK
17.1K discussions
44.3K comments
Most recent: GATK 4.1.1.0 GenomicsDBImport error : Duplicate field name AF found in vid attribute "fields" by JoanGibert on
8:11AM
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Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
141 discussions
752 comments
Most recent: (How to) Call somatic mutations using GATK4 Mutect2 by syer89 on
7:38AM
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
196 discussions
4.3K comments
Most recent: At what point should I merge read group BAM files belonging to the same sample into a single file? by Lufpa on
September 3
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
671 discussions
-36 comments
Most recent: Are there any default --contig-ploidy-priors available? by slee on
August 25
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Expand for more options.Tools developed by other groups