GATK Support Forum

Category List

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  Announcements

  Announcements regarding new tools and features, as well as user support service and forum features

  240 discussions 963 comments Most recent: Spam issue on the forum by jimkress on November 19 November 19
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  Ask the GATK team

  Errors, bugs, problems and usage questions for the developers of the GATK or the community at large

  15K discussions 39.2K comments Most recent: MuTect2 LOD calculations by davidben on 9:08PM 9:08PM
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  GATK4 User Guide

  This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.

  123 discussions 509 comments Most recent: (How to) Filter on genotype using VariantFiltration by shlee on 8:41PM 8:41PM

  Child Categories: Best Practices Workflows, Methods and Algorithms, Tutorials, Dictionary, Frequently Asked Questions, Solutions to Problems, Pipelining Options
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  GATK3 User Guide

  This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.

  196 discussions 4.2K comments Most recent: Allele Depth (AD) is lower than expected by aseeholzer on 1:36PM 1:36PM

  Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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  Zoo & Garden

  This section is intended for discussions that are specifically about resources for analysis of non-human data.

  344 discussions -44 comments Most recent: Riverbanks zoo & Gardens Columbia, SC? by oliviajayden on November 17 November 17
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  Tools related to GATK

  Tools developed by other groups

  586 discussions 2.1K comments Most recent: question in recapseg .pcov file by hpevkdzl on November 18 November 18

  Child Categories: MuTect v1, ReCapSeg, Oncotator , GenomeSTRiP