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GATK Support Forum
Category List
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Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
238 discussions
895 comments
Most recent: The GATK Best Practices for variant calling on RNAseq, in full detail by Sheila on
June 24
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Expand for more options.Errors, bugs, problems and usage questions for the developers of the GATK or the community at large
7.8K discussions
36.9K comments
Most recent: Running GATK WDL on FireCloud with TCGA controlled bam files by lvqi_0172 on
4:33AM
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Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
120 discussions
273 comments
Most recent: (How to) Consolidate GVCFs for joint calling with GenotypeGVCFs by biojiangke on
June 22
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
195 discussions
4K comments
Most recent: (howto) Visualize an alignment with IGV by vivekruhela on
7:21AM
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
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Expand for more options.Tools developed by other groups
512 discussions
2K comments
Most recent: Window size for samples of varying coverage by pjmtele on
June 23