GATK Support Forum
Category List
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Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
240 discussions
974 comments
Most recent: Run the germline GATK Best Practices Pipeline for $5 per genome by bshifaw on
December 10
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Expand for more options.Errors, bugs, problems and usage questions for the developers of the GATK or the community at large
16.2K discussions
39.7K comments
Most recent: Where to obtain HumanNCBI37_UCSC reference sequence? by samlj on
3:16AM
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Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
123 discussions
522 comments
Most recent: (How to) Call somatic mutations using GATK4 Mutect2 by Jong_Hwan_Kim on
December 11
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
196 discussions
4.2K comments
Most recent: Calling variants in RNAseq by XiaoshenYin on
December 12
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
659 discussions
-46 comments
Most recent: Riverbanks zoo & Gardens Columbia, SC? by Tiffany_at_Broad on
December 7
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Expand for more options.Tools developed by other groups
768 discussions
2.1K comments
Most recent: SVDiscovery yielding far greater than expected number of polymorphic sites by bhandsaker on
December 12