Holiday Notice:
The Frontline Support team will be offline December 17-18 due to an institute-wide retreat and offline December 22- January 1, while the institute is closed. Thank you for your patience during these next few weeks as we get to all of your questions. Happy Holidays!
The Frontline Support team will be offline December 17-18 due to an institute-wide retreat and offline December 22- January 1, while the institute is closed. Thank you for your patience during these next few weeks as we get to all of your questions. Happy Holidays!
GATK Support Forum
Category List
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Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
240 discussions
974 comments
Most recent: Run the germline GATK Best Practices Pipeline for $5 per genome by bshifaw on
December 10
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Expand for more options.Errors, bugs, problems and usage questions for the developers of the GATK or the community at large
16.2K discussions
39.7K comments
Most recent: How to parallelise HaplotypeCaller in 4.0.0? by afzm on
3:39PM
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Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
123 discussions
537 comments
Most recent: (How to part II) Sensitively detect copy ratio alterations and allelic segments by DavidNix on
3:40PM
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
196 discussions
4.2K comments
Most recent: Should I use UnifiedGenotyper or HaplotypeCaller to call variants on my data? by MehulS on
December 17
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
660 discussions
-43 comments
Most recent: Identifying de novo variants in a mutant without good reference genome by davidben on
December 17
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Expand for more options.Tools developed by other groups
768 discussions
2.1K comments
Most recent: SVDiscovery yielding far greater than expected number of polymorphic sites by bhandsaker on
December 12