GATK Support Forum
Category List
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Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
240 discussions
973 comments
Most recent: Run the germline GATK Best Practices Pipeline for $5 per genome by jaideepjoshi on
December 7
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Expand for more options.Errors, bugs, problems and usage questions for the developers of the GATK or the community at large
16.2K discussions
39.6K comments
Most recent: is gatk mutect2 can be used inProcessPoolExecutor or ThreadPoolExecutor? I get error by manba on
5:58AM
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Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
123 discussions
520 comments
Most recent: Somatic copy number variant discovery (CNVs) by shlee on
December 3
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
196 discussions
4.2K comments
Most recent: (howto) Get started with GATK4 beta by Geraldine_VdAuwera on
December 5
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
659 discussions
-43 comments
Most recent: Riverbanks zoo & Gardens Columbia, SC? by Tiffany_at_Broad on
December 7
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Expand for more options.Tools developed by other groups