GATK Support Forum
Category List
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Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
241 discussions
978 comments
Most recent: Service note: we are now software.broadinstitute.org/gatk by mgogol on
January 23
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Expand for more options.Errors, bugs, problems and usage questions for the developers of the GATK or the community at large
16.3K discussions
40.2K comments
Most recent: DepthOfCoverage: Error with option -baseCounts by bshifaw on
January 23
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Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
124 discussions
562 comments
Most recent: (How to) Filter variants either with VQSR or by hard-filtering by shlee on
January 23
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
196 discussions
4.3K comments
Most recent: Description and examples of the steps in the ACNV case workflow by petr101 on
January 23
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
660 discussions
-42 comments
Most recent: Identifying de novo variants in a mutant without good reference genome by Teatime on
December 2018
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Expand for more options.Tools developed by other groups