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GATK Support Forum
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Most recent: How to run the entire pipeline (using even Spark tools) from Java? by Vzzarr on
October 20
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
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Most recent: Using JEXL to apply hard filters or select variants based on annotation values by manim on
October 20
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Expand for more options.Tools developed by other groups
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Most recent: Using GenomeStrip to genotype known vcf by bgrenier on
October 20