GATK Support Forum

Category List

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  Announcements

  Announcements regarding new tools and features, as well as user support service and forum features

  239 discussions 949 comments Most recent: Goodbye GATK Forum by sahamdotnews on October 19 October 19
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  Ask the GATK team

  Errors, bugs, problems and usage questions for the developers of the GATK or the community at large

  8.4K discussions 38.6K comments Most recent: SAMException of Query asks for data past end of contig occured in mutect2 by kyoungwoo on 1:45AM 1:45AM
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  GATK4 User Guide

  This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.

  123 discussions 473 comments Most recent: Intervals and interval lists by alongalor on October 22 October 22

  Child Categories: Best Practices Workflows, Methods and Algorithms, Tutorials, Dictionary, Frequently Asked Questions, Solutions to Problems, Pipelining Options
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  GATK3 User Guide

  This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.

  196 discussions 4.2K comments Most recent: How should I pre-process data from multiplexed sequencing and multi-library designs? by shlee on October 19 October 19

  Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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  Zoo & Garden

  This section is intended for discussions that are specifically about resources for analysis of non-human data.

  47 discussions 19 comments Most recent: https://www.imdb.com/list/ls040907869/ by rajado on October 21 October 21
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  Tools related to GATK

  Tools developed by other groups

  534 discussions 2.1K comments Most recent: http://ultrasupplement.com/nutrisystem/ by zfgibdsu on October 20 October 20

  Child Categories: MuTect v1, ReCapSeg, Oncotator , GenomeSTRiP