GATK Support Forum
Category List
-
Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
250 discussions
990 comments
Most recent: Improvements in Germline Short Variants Calling Part 1 by gauthier on
2:51PM
-
Expand for more options.Errors, bugs, problems and usage questions for the developers of the GATK or the community at large
16.4K discussions
40.7K comments
Most recent: Processing a large number of gVCFs files in a local cluster by bshifaw on
3:34PM
-
Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
-
Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
196 discussions
4.3K comments
Most recent: (How to) Map reads to a reference with alternate contigs like GRCh38 by blueskypy on
3:27PM
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
-
Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
661 discussions
-42 comments
Most recent: Calling Variants with more than one tool necessary? by sp580 on
February 6
-
Expand for more options.Tools developed by other groups
773 discussions
2.1K comments
Most recent: Is it possible to use vcf file as the input of the GenomeSTRiP? by bhandsaker on
February 8