Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
GATK Support Forum
Category List
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Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
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Expand for more options.Errors, bugs, problems and usage questions for the developers of the GATK or the community at large
17K discussions
43.8K comments
Most recent: Computataion time per one million records,is varying in different modules of GATK 4 by Tiffany_at_Broad on
5:39PM
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Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
196 discussions
4.3K comments
Most recent: Description and examples of the steps in the ACNV case workflow by slee on
August 16
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
671 discussions
-36 comments
Most recent: Different resource for Mutect2/GetPileupSummaries when dealing with genome data by michaelmc on
August 14
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Expand for more options.Tools developed by other groups
786 discussions
2.2K comments
Most recent: (howto) Install and run Oncotator for the first time by Lyon0804 on
10:32AM