GATK Support Forum
Category List
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Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
255 discussions
1K comments
Most recent: Funcotator: Functional annotation out of beta by jmedarom on
April 10
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Expand for more options.Errors, bugs, problems and usage questions for the developers of the GATK or the community at large
16.6K discussions
41.8K comments
Most recent: PON: Mutect2 include MNPs and crash GenomicsDBImport by SkyWarrior on
2:41AM
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Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
138 discussions
648 comments
Most recent: (How to) Call somatic mutations using GATK4 Mutect2 by sahiilseth on
April 20
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
196 discussions
4.3K comments
Most recent: Spanning or overlapping deletions (* allele) by afzm on
April 16
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
668 discussions
-37 comments
Most recent: VQSR extremely low numbers of TP variants in tranche.(0.01 novel variants?)Weird tranche and VQSR by wlai on
April 12
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Expand for more options.Tools developed by other groups