GATK Support Forum
Category List
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Expand for more options.Announcements regarding new tools and features, as well as user support service and forum features
241 discussions
975 comments
Most recent: Differences between GATK3 MuTect2 and GATK4 Mutect2 by ying_sheng_1 on
January 8
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Expand for more options.Errors, bugs, problems and usage questions for the developers of the GATK or the community at large
16.3K discussions
40.1K comments
Most recent: How to output AD ref and alt in separate columns with VariantsToTable by steve1 on
January 15
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Expand for more options.This section contains the GATK4 documentation. This content is best viewed at https://software.broadinstitute.org/gatk/documentation.
124 discussions
554 comments
Most recent: (How to) Call somatic mutations using GATK4 Mutect2 by shlee on
January 14
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Expand for more options.This is an exact mirror of the GATK website Guide pages, with the added possibility of commenting on the documentation articles. For detailed information about the GATK Best Practices workflows, please see https://www.broadinstitute.org/gatk/guide/best-practices.php.
196 discussions
4.3K comments
Most recent: (How to) Map reads to a reference with alternate contigs like GRCh38 by shlee on
January 14
Child Categories: Tutorials, Frequently Asked Questions, Solutions to Problems, Methods and Algorithms, Dictionary, GATK 4 Beta, Archive
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Expand for more options.This section is intended for discussions that are specifically about resources for analysis of non-human data.
660 discussions
-42 comments
Most recent: Identifying de novo variants in a mutant without good reference genome by Teatime on
December 2018
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Expand for more options.Tools developed by other groups
770 discussions
2.1K comments
Most recent: GATK 4 version still have some problems with asterisk in the VCF files. by shlee on
January 15