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Thanks for following up. I realized that I was using different blacklist intervals from the resource bundle.
I'm running into a similar issue at the DenoiseReadCounts step with cnv_somatic_pair_workflow: 22:50:58.635 INFO SVDDenoisingUtils - Validating sample intervals against original intervals used to build panel of normals... 22:50:59.487 INFO Denois…
Hi @shlee, I'm currently trying to use Firecloud to run the cnv_somatic_panel_workflow.wdl and cnv_somatic_pair_workflow.wdl available here: https://github.com/gatk-workflows/gatk4-somatic-cnvs/blob/master/cnv_somatic_panel_workflow.wdl Looks like…
The google bucket is an external one (not the auto created one when I made the workspace). I initially wanted to use the auto created bucket, but I wasn't able to upload my files with gsutil cp (which was actually an issue with the specific python …
Was recommended to change the proxy group permissions to "storage object viewer", "storage legacy bucket reader", and "storage legacy bucket owner" and it looks like the workflow completed successfully! I don't clearly…
I am running into the same error: (Image) I have a workspace fccredits-radium-magenta-9081/witte-cfdna that was created on December 14, 2018 under the FireCloud Billing project fccredits-radium-magenta-9081 (free credits), and I'm trying to run my…