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@bshifaw You've been added to the authorization domain, so please let me know if you see any obvious issues with my method when you get the chance
Sorry, I'll need to ask my PI about any restrictions on these data but either way I'll come to office hours this week to sort it out with you folks!
@Tiffany_at_Broad according to the permissions settings, it looks like the [email protected] should at least have READER access for cmi-met-prostate-project/SC_methods_testing. Can you not access the workspace at all on your end?…
@KateN Unfortunately I couldn't make this Wednesday's office hours--will this be a weekly occurence?
@KateN I can confirm that the method has the pair entity set, has case_sample and control_sample in the pair entity metadata, as well as gatk4cnv_target_tsv_capture in the sample metadata. Let me know if if you have any ideas or have office hours I …
Thanks @KateN, I have shared the workspace SC_methods_testing with the group you mentioned and the method is called ConvertBedToTargetFile_for_pairs