Recent Discussions

Discussion List

• [Failed] How to fix it?

  Accepted Answer 85 views 2 comments 0 points Most recent by cbao August 2017Ask the FireCloud Team
• Heads up: breaking change in the API

  202 views 0 comments 0 points Started by Geraldine_VdAuwera August 2017 FireCloud Announcements
• Need to be able to see the snapshot of the configuration in the monitor tab

  Accepted Answer 35 views 2 comments 0 points Most recent by yfarjoun August 2017Ask the FireCloud Team
• Cannot read a TSV that's bigger than 128K bytes, but I can write it!

  Answered 128 views 7 comments 0 points Most recent by Ruchi August 2017Ask the FireCloud Team
• how to ssh to a running FireCloud job node?

  Answered 109 views 6 comments 0 points Most recent by Geraldine_VdAuwera August 2017Ask the FireCloud Team
• Need to reset columns or clear cookies in order to see new attribute (column) in GUI

  Answered 67 views 5 comments 0 points Most recent by birger August 2017Ask the FireCloud Team
• method/workflow attributes and default configurations

  Accepted Answer 69 views 1 comment 0 points Most recent by Geraldine_VdAuwera August 2017Ask the FireCloud Team
• how to launch method on all samples in the workspace?

  Accepted Answer 104 views 4 comments 0 points Most recent by bhaas August 2017Ask the FireCloud Team
• can't import new method config and can't delete old one

  Accepted Answer 68 views 3 comments 0 points Most recent by Geraldine_VdAuwera August 2017Ask the FireCloud Team
• RFE: RESTful api needs a workspace rename feature

  Answered 88 views 5 comments 0 points Most recent by KateN August 2017Ask the FireCloud Team
• Duplicate Entities in Entity Sets

  Accepted Answer 56 views 1 comment 0 points Most recent by KateN August 2017Ask the FireCloud Team
• Cryptic failure messages

  Answered 373 views 36 comments 0 points Most recent by KateN August 2017Ask the FireCloud Team
• An array of files as an entity attribute in data model

  Answered 235 views 7 comments 0 points Most recent by KateN August 2017Ask the FireCloud Team
• More retries than preemptible setting?

  Answered 94 views 5 comments 0 points Most recent by gauthier August 2017Ask the FireCloud Team
• Job stuck in the running state

  Accepted Answer 268 views 11 comments 0 points Most recent by KateN August 2017Ask the FireCloud Team
• What is MutectFC for?

  Accepted Answer 61 views 1 comment 0 points Most recent by cbao August 2017Ask the FireCloud Team
• How to remove unwanted entity (e.g. sample) from my workspaces?

  Accepted Answer 291 views 2 comments 0 points Most recent by cbao August 2017Ask the FireCloud Team
• Cannot access hg38 open access workspaces in FireCloud Data Library

  Answered 103 views 15 comments 0 points Most recent by birger August 2017Ask the FireCloud Team
• RFE: Help Button in web UI should link to relevant documentation

  Accepted Answer 52 views 1 comment 0 points Most recent by Geraldine_VdAuwera August 2017Ask the FireCloud Team
• RNA PoN

  Answered 124 views 3 comments 0 points Most recent by Geraldine_VdAuwera August 2017Ask the FireCloud Team
• blank fields after cancelling editing a method config

  Answered 52 views 3 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• Any way to download hellbender-all-1.0.jar?

  Accepted Answer 90 views 2 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• "Could not capture docker logs" error

  Accepted Answer 194 views 11 comments 0 points Most recent by esalinas July 2017Ask the FireCloud Team
• (howto) Add users to a FireCloud Billing Project

  210 views 2 comments 0 points Most recent by nmcabili July 2017Tutorials
• Workspace clones & inheriting permissions

  Accepted Answer 105 views 2 comments 0 points Most recent by RLCollins July 2017Ask the FireCloud Team
• Large loadfiles do not work

  Answered 82 views 8 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• No access is pair set table in data dialog

  Answered 144 views 12 comments 0 points Most recent by dvoet July 2017Ask the FireCloud Team
• Long submission delay - still

  Accepted Answer 179 views 8 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• Mismatched statuses getting worse

  Answered 38 views 1 comment 0 points Most recent by KateN July 2017Ask the FireCloud Team
• Unable to scatter-gather over entities in firecloud

  Accepted Answer 211 views 6 comments 1 point Most recent by adunford July 2017Ask the FireCloud Team
• Error recreating a previously deleted method

  Accepted Answer 64 views 3 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• Cryptic error message in Firecloud job execution

  Accepted Answer 91 views 9 comments 0 points Most recent by gordon123 July 2017Ask the FireCloud Team
• July 19th release has broken GDC file retrieval

  Answered 336 views 6 comments 0 points Most recent by dvoet July 2017Ask the FireCloud Team
• What is the status of file streaming?

  Accepted Answer 78 views 2 comments 0 points Most recent by skashin July 2017Ask the FireCloud Team
• Need info on how to create a sample_set in the FireCloud Basics section

  Answered 87 views 1 comment 0 points Most recent by Geraldine_VdAuwera July 2017Ask the FireCloud Team
• Is FireCloud down?

  147 views 0 comments 0 points Started by Geraldine_VdAuwera July 2017 Frequently Asked Questions
• Upload of partial pair metadata

  Answered 58 views 2 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• message: Unexpected failure in EJEA. (again)

  Answered 74 views 2 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• Cannot find or see tutorial or shared workspaces in firecloud

  Answered 65 views 3 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• Cannot add simple method to namespace of which I am owner

  Answered 82 views 5 comments 0 points Most recent by nmcabili July 2017Ask the FireCloud Team
• Firecloud can't decide if a workflow is running or not..

  Answered 127 views 7 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• >10% update_entity calls fail with 500/502 errors

  Answered 56 views 3 comments 0 points Most recent by dlivitz July 2017Ask the FireCloud Team
• task config 'eval' based on specific entity

  Answered 54 views 5 comments 0 points Most recent by dlivitz July 2017Ask the FireCloud Team
• Issues with building a workspace from a billing project

  Answered 110 views 10 comments 0 points Most recent by Tiffany_at_Broad July 2017Ask the FireCloud Team
• Workflows: 2744 Queued; 4838 Active; 2744 ahead of yours

  Answered 121 views 14 comments 0 points Most recent by gordon123 July 2017Ask the FireCloud Team
• data model not updated in context of set-submission with multiple workflows for a single entity

  Answered 94 views 6 comments 0 points Most recent by francois_a July 2017Ask the FireCloud Team
• Cannot log into forum

  Answered 67 views 3 comments 0 points Most recent by dlivitz July 2017Ask the FireCloud Team
• unable to see submissions that aren't my own?

  Accepted Answer 109 views 18 comments 0 points Most recent by esalinas July 2017Ask the FireCloud Team
• write_lines lacks newline at end of file?

  Accepted Answer 113 views 6 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• TCGA Alignment

  Answered 137 views 3 comments 0 points Most recent by birger July 2017Ask the FireCloud Team
• size arithmetic issue?

  Answered 104 views 3 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• "Could not find scope" Failure

  Accepted Answer 170 views 2 comments 0 points Most recent by abaumann July 2017Ask the FireCloud Team
• Is the observed behavior of write_lines correct?

  Accepted Answer 49 views 3 comments 0 points Most recent by esalinas July 2017Ask the FireCloud Team
• Variable machine disk size

  Accepted Answer 213 views 12 comments 0 points Most recent by birger July 2017Ask the FireCloud Team
• call caching criteria

  Answered 55 views 2 comments 0 points Most recent by gordon123 July 2017Ask the FireCloud Team
• Job stuck in "aborting" state

  Answered 72 views 4 comments 0 points Most recent by abaumann July 2017Ask the FireCloud Team
• Successful jobs marked as failed

  Answered 83 views 6 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• Lack of Error Message

  Answered 84 views 5 comments 0 points Most recent by KateN July 2017Ask the FireCloud Team
• Release Notes: July 2017

  268 views 1 comment 0 points Most recent by KateN July 2017FireCloud Announcements
• Is FireCloud down?

  Answered 56 views 2 comments 0 points Most recent by Geraldine_VdAuwera July 2017Ask the FireCloud Team
• Small, simple UI improvements for data tab

  Accepted Answer 78 views 2 comments 1 point Most recent by Tiffany_at_Broad July 2017Ask the FireCloud Team
• Warning: Creating VM and disk(s) would exceed \"CPUS\" in region us-central1, will try again

  Accepted Answer 94 views 3 comments 0 points Most recent by esalinas July 2017Ask the FireCloud Team
• JES log: ResumableDownloadException in lots of failed TCGA jobs.

  Answered 115 views 6 comments 0 points Most recent by Geraldine_VdAuwera July 2017Ask the FireCloud Team
• Extended Memory?

  Answered 116 views 7 comments 0 points Most recent by gordon123 July 2017Ask the FireCloud Team
• Requests to firecloud timing out?

  Accepted Answer 88 views 6 comments 0 points Most recent by Tiffany_at_Broad July 2017Ask the FireCloud Team
• re-assign ownership of orphaned methods.

  Accepted Answer 131 views 13 comments 0 points Most recent by dheiman June 2017Ask the FireCloud Team
• firecould "loading auth" forever?

  Accepted Answer 77 views 2 comments 0 points Most recent by esalinas June 2017Ask the FireCloud Team
• (howto) Prepare for a FireCloud 101 workshop

  135 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 Tutorials
• How do I access TCGA Data?

  1K views 3 comments 0 points Most recent by smulane June 2017Archive
• Metadata from 7K samples

  Accepted Answer 182 views 8 comments 0 points Most recent by abaumann June 2017Ask the FireCloud Team
• An update to method naming rules

  252 views 0 comments 0 points Started by KateN June 2017 FireCloud Announcements
• Why is a "samples" attribute attached to sample_set entities, instead of being a "members" field?

  Answered 147 views 4 comments 1 point Most recent by dvoet June 2017Ask the FireCloud Team
• Suggest adding formal definition of "attribute" to the dictionary

  83 views 2 comments 0 points Most recent by Geraldine_VdAuwera June 2017Ask the FireCloud Team
• Can I register for FireCloud with my current (non-Gmail) email address?

  441 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 Frequently Asked Questions
• firecloud account associated with non-gmail email accounts.

  Answered 82 views 1 comment 0 points Most recent by Geraldine_VdAuwera June 2017Ask the FireCloud Team
• esalinas/MutationCalling_Filter_v1-0_BETA Snapshot ID: 24 fails in 4 of 97 jobs

  Accepted Answer 59 views 4 comments 0 points Most recent by Chip June 2017Ask the FireCloud Team
• workspace/realm sharing request for enhancement

  Accepted Answer 80 views 4 comments 0 points Most recent by KateN June 2017Ask the FireCloud Team
• Is firecloud down?

  Answered 145 views 16 comments 0 points Most recent by birger June 2017Ask the FireCloud Team
• How to get the status of running jobs?

  Accepted Answer 181 views 10 comments 0 points Most recent by bhandsaker June 2017Ask the FireCloud Team
• Is there a way to see in UI the status of all my active jobs, across workspaces?

  Answered 63 views 1 comment 0 points Most recent by KateN June 2017Ask the FireCloud Team
• Release notes: June 2017

  234 views 0 comments 0 points Started by KateN June 2017 FireCloud Announcements
• Workflow was marked as Failed, but many tasks continued to run after that

  Answered 101 views 5 comments 0 points Most recent by skashin June 2017Ask the FireCloud Team
• Prerequisite expressions (firehose parity)

  Answered 48 views 4 comments 0 points Most recent by dheiman June 2017Ask the FireCloud Team
• what triggers "Unexpected failure in EJEA (root cause not captured)" message?

  Answered 85 views 4 comments 0 points Most recent by birger June 2017Ask the FireCloud Team
• "Internal Server Error" on entities API calls

  Answered 83 views 3 comments 0 points Most recent by KateN June 2017Ask the FireCloud Team
• observing delays

  Accepted Answer 61 views 2 comments 0 points Most recent by esalinas June 2017Ask the FireCloud Team
• RFE: Launch Analysis... should only list entities a method configuration can run on

  Accepted Answer 93 views 1 comment 0 points Most recent by KateN June 2017Ask the FireCloud Team
• com.google.cloud.storage.StorageException: 500 Internal Server Error Backend Error

  Answered 161 views 4 comments 0 points Most recent by KateN June 2017Ask the FireCloud Team
• failing to get size of file

  Answered 103 views 11 comments 0 points Most recent by birger June 2017Ask the FireCloud Team
• Reorganization of the documentation

  181 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 FireCloud Announcements
• Google bucket

  366 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 Dictionary
• Workspace

  105 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 Dictionary
• Monitor tab

  100 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 Dictionary
• Analysis submission status

  100 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 Dictionary
• Call/Task submission status

  97 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 Dictionary
• Workflow submission status

  111 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 Dictionary
• Pair (data model entity)

  120 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 Dictionary
• Sample (data model entity)

  157 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 Dictionary
• Participant (data model entity)

  153 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 Dictionary
• Data Model

  180 views 0 comments 0 points Started by Geraldine_VdAuwera June 2017 Dictionary