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WDL validates and runs fine standalone, but crashes when uploaded to Firecloud
gordon123
BroadMember, Broadie ✭
I inherited a large block of WDL 1.0 It validates fine on womtool 32, 33.1, and 34, and I've tested that it runs fine on Cromwell 34. However, when I try to upload it to the method repo, via ether GUI or FISSFC, I get a WDL validation error:
Error 400 (FireCloud): Invalid WDL: Unrecognized token on line 653, column 23:
-t ~{cpu} \
^
Any idea what is happening or the best way to debug?
Gordon
Best Answers
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KateN
Cambridge, MA admin
FireCloud does not yet support WDL 1.0. If you adjust the syntax to $ instead of ~, it should work.
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KateN
Cambridge, MA admin
Our project manager who sets that particular timeline is currently on vacation. However, I do know that it is the top priority item on our fourth quarter goals this year. I will get back to you if I hear otherwise when she returns from vacation.
Answers
FireCloud does not yet support WDL 1.0. If you adjust the syntax to $ instead of ~, it should work.
Is WDL 1.0 on a near-term roadmap for FireCloud?
I'm not sure on that one, let me check and get back to you.
Our project manager who sets that particular timeline is currently on vacation. However, I do know that it is the top priority item on our fourth quarter goals this year. I will get back to you if I hear otherwise when she returns from vacation.
Thanks!